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bbsi digested pxr003 vector  (Addgene inc)


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    Structured Review

    Addgene inc bbsi digested pxr003 vector
    Bbsi Digested Pxr003 Vector, supplied by Addgene inc, used in various techniques. Bioz Stars score: 95/100, based on 71 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/pxr003+casrx+grna+cloning+backbone/pXR003%3A+CasRx+gRNA+cloning+backbone+(Plasmid+%23109053)/pm41928225-94-9-12
    Average 95 stars, based on 71 article reviews
    bbsi digested pxr003 vector - by Bioz Stars, 2026-09
    95/100 stars

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    Related Articles

    Plasmid Preparation:

    Article Title: Development of CRISPR/Cas13-based analytical tools to study RNA-Protein Interactions
    Article Snippet: For crRNA production or guide RNA construction, annealed oligos were inserted into crRNA backbone vector or lentiGuide-Puro vector . crRNA sequences were designed with Cas13design ( https://cas13design.nygenome.org/ ). sgRNA sequences were designed with CRISPick ( https://portals.broadinstitute.org/gppx/crispick/public ). .. The sequences of the crRNAs and sgRNAs used in this study are described in the Appendix Table S1. pXR002: EF1a-dCasRx-2A-EGFP (Addgene plasmid # 109050; http://n2t.net/addgene:109050 ; RRID:Addgene_109050) and pXR003: CasRx gRNA cloning backbone (Addgene plasmid # 109053; http://n2t.net/addgene:109053 ; RRID:Addgene_109053) were gifts from Patrick Hsu. .. 3xHA-TurboID-NLS_pCDNA3 was a gift from Alice Ting (Addgene plasmid # 107171; http://n2t.net/addgene:107171 ; RRID:Addgene_107171). lentiCas9-Blast (Addgene plasmid # 52962; http://n2t.net/addgene:52962 ; RRID:Addgene_52962) and lentiGuide-Puro (Addgene plasmid # 52963; http://n2t.net/addgene:52963 ; RRID:Addgene_52963) were gifts from Feng Zhang.

    Article Title: Adeno-associated viral vector resource for the RNA-targeting Cas13d: A comparison of high-fidelity variants, DjCas13d and hfCas13d
    Article Snippet: The DNA sequence of RfxCas13d (CasRx) was derived from pXR001: EF1a-CasRx-2A-EGFP, Addgene plasmid no. 109049. .. CasRx-compatible gRNA expression cassettes used in this study were derived from pXR003: CasRx gRNA cloning backbone, Addgene plasmid no. 109053. ..

    Article Title: Adeno-Associated Viral Vector Resource for the RNA-Targeting Cas13d: A Comparison of High-Fidelity Variants, DjCas13d and hfCas13d
    Article Snippet: The DNA sequence of 399 RfxCas13d (CasRx) was derived from pXR001: EF1a-CasRx-2A-EGFP, Addgene plasmid #109049. .. CasRx-compatible 400 gRNA expression cassettes used in this study were derived from pXR003: CasRx gRNA cloning backbone, Addgene 401 plasmid #109053. ..

    Article Title: U2AF1 mutations rescue deleterious exon skipping induced by KRAS mutations
    Article Snippet: Band intensities were quantified using the Analyze Gels feature in Fiji (ImageJ) and used to calculate the percent spliced in for KRAS exon 2 or exon 3. .. pXR002: EF1a-dCasRx-2A-EGFP and pXR003: CasRx gRNA cloning backbone were gifts from Patrick Hsu (Addgene plasmid # 109050 and 109053) . dCasRx sgRNAs were designed using the cas13design tool ( https://cas13design.nygenome.org ) , , ordered from IDT and resuspended in QIAGEN elution buffer (Extended Data Table 3). ..

    Cloning:

    Article Title: Development of CRISPR/Cas13-based analytical tools to study RNA-Protein Interactions
    Article Snippet: For crRNA production or guide RNA construction, annealed oligos were inserted into crRNA backbone vector or lentiGuide-Puro vector . crRNA sequences were designed with Cas13design ( https://cas13design.nygenome.org/ ). sgRNA sequences were designed with CRISPick ( https://portals.broadinstitute.org/gppx/crispick/public ). .. The sequences of the crRNAs and sgRNAs used in this study are described in the Appendix Table S1. pXR002: EF1a-dCasRx-2A-EGFP (Addgene plasmid # 109050; http://n2t.net/addgene:109050 ; RRID:Addgene_109050) and pXR003: CasRx gRNA cloning backbone (Addgene plasmid # 109053; http://n2t.net/addgene:109053 ; RRID:Addgene_109053) were gifts from Patrick Hsu. .. 3xHA-TurboID-NLS_pCDNA3 was a gift from Alice Ting (Addgene plasmid # 107171; http://n2t.net/addgene:107171 ; RRID:Addgene_107171). lentiCas9-Blast (Addgene plasmid # 52962; http://n2t.net/addgene:52962 ; RRID:Addgene_52962) and lentiGuide-Puro (Addgene plasmid # 52963; http://n2t.net/addgene:52963 ; RRID:Addgene_52963) were gifts from Feng Zhang.

    Article Title: Adeno-associated viral vector resource for the RNA-targeting Cas13d: A comparison of high-fidelity variants, DjCas13d and hfCas13d
    Article Snippet: The DNA sequence of RfxCas13d (CasRx) was derived from pXR001: EF1a-CasRx-2A-EGFP, Addgene plasmid no. 109049. .. CasRx-compatible gRNA expression cassettes used in this study were derived from pXR003: CasRx gRNA cloning backbone, Addgene plasmid no. 109053. ..

    Article Title: RSRC2 is a novel RNA-binding protein that safeguards mitotic fidelity by interacting with the lncRNA C1QTNF1-AS1
    Article Snippet: .. Five micrograms of pxR003 CasRx gRNA cloning backbone (pUC19; 109053, Addgene) was linearized with 10 Units of BbsI restriction enzyme (R3539, NEB) at 37°C for 4 h. BbsI was then heat-inactivated at 65°C for 20 min. .. The linearized plasmid was run on 1% agarose gel, and the corresponding band was cut and extracted using QIAquick ® Gel Extraction Kit (28 704, QIAGEN).

    Article Title: Adeno-Associated Viral Vector Resource for the RNA-Targeting Cas13d: A Comparison of High-Fidelity Variants, DjCas13d and hfCas13d
    Article Snippet: The DNA sequence of 399 RfxCas13d (CasRx) was derived from pXR001: EF1a-CasRx-2A-EGFP, Addgene plasmid #109049. .. CasRx-compatible 400 gRNA expression cassettes used in this study were derived from pXR003: CasRx gRNA cloning backbone, Addgene 401 plasmid #109053. ..

    Article Title: U2AF1 mutations rescue deleterious exon skipping induced by KRAS mutations
    Article Snippet: Band intensities were quantified using the Analyze Gels feature in Fiji (ImageJ) and used to calculate the percent spliced in for KRAS exon 2 or exon 3. .. pXR002: EF1a-dCasRx-2A-EGFP and pXR003: CasRx gRNA cloning backbone were gifts from Patrick Hsu (Addgene plasmid # 109050 and 109053) . dCasRx sgRNAs were designed using the cas13design tool ( https://cas13design.nygenome.org ) , , ordered from IDT and resuspended in QIAGEN elution buffer (Extended Data Table 3). ..

    Article Title: The RNA-binding protein RSRC2 promotes mitotic fidelity by interacting with the lncRNA C1QTNF1-AS1
    Article Snippet: .. 5 μg of pxR003 CasRx gRNA cloning backbone (pUC19; 109053, Addgene) was linearised with 10 Units of BbsI restriction enzyme (R3539, NEB) at 37 °C for 4 hrs. ..

    Article Title: RSRC2 is a novel RNA-binding protein that safeguards mitotic fidelity by interacting with the lncRNA C1QTNF1-AS1.
    Article Snippet: .. Five micrograms of pxR003 CasRx gRNA cloning backbone (pUC19; 109053, Addgene) was linearized with 10 Units of BbsI restriction enzyme (R3539, NEB) at 37 ◦C for 4 h. BbsI was then heat-inactivated at 65 ◦C for 20 min. .. The linearized plasmid was run on 1% agarose gel, and the corresponding band was cut and extracted using QIAquick ® Gel Extraction Kit (28 704, QIAGEN).

    Article Title: CRISPR/CasRx suppresses KRAS-induced brain arteriovenous malformation developed in postnatal brain endothelial cells in mice.
    Article Snippet: For pAAV-CAGHA-KRASG12D and pAAV-CAG-CasRx-Myc, HA-KRASG12D and CasRx-Myc amplified from pXR001:EF1a-CasRx-2A-EGFP (109049, Addgene) were subcloned into pAAV-CAG-tdTomato in a substitution of tdTomato. .. For pAAV-U6-gRNA-KRASG12D, gRNA-KRASG12D (5′-TAGTTGGAGCTGATGGCGTAGG-3′) was subcloned into pXR003:CasRx gRNA cloning backbone (109053, Addgene), and U6-gRNA-KRASG12D was subcloned into HindIII-NotI sites of pAAV-CMV (6230, Takara). pAAV-CAG-EGFP (AV-1-PV1963, Penn Vector Core) and pAAV-Ple261-iCre (49113, Addgene) were further used. .. To produce AAVs, human 293T cells (632273, TAKARA) were transfected with pAAV plasmid, pUCmini-iCAP-PHP.V1 (127847, Addgene) (24) or pXX2-187-NRGTEWD (pAAV-BR1) (23), and pHelper plasmid (TAKARA) (86).

    Expressing:

    Article Title: Adeno-associated viral vector resource for the RNA-targeting Cas13d: A comparison of high-fidelity variants, DjCas13d and hfCas13d
    Article Snippet: The DNA sequence of RfxCas13d (CasRx) was derived from pXR001: EF1a-CasRx-2A-EGFP, Addgene plasmid no. 109049. .. CasRx-compatible gRNA expression cassettes used in this study were derived from pXR003: CasRx gRNA cloning backbone, Addgene plasmid no. 109053. ..

    Article Title: Adeno-Associated Viral Vector Resource for the RNA-Targeting Cas13d: A Comparison of High-Fidelity Variants, DjCas13d and hfCas13d
    Article Snippet: The DNA sequence of 399 RfxCas13d (CasRx) was derived from pXR001: EF1a-CasRx-2A-EGFP, Addgene plasmid #109049. .. CasRx-compatible 400 gRNA expression cassettes used in this study were derived from pXR003: CasRx gRNA cloning backbone, Addgene 401 plasmid #109053. ..

    Derivative Assay:

    Article Title: Adeno-associated viral vector resource for the RNA-targeting Cas13d: A comparison of high-fidelity variants, DjCas13d and hfCas13d
    Article Snippet: The DNA sequence of RfxCas13d (CasRx) was derived from pXR001: EF1a-CasRx-2A-EGFP, Addgene plasmid no. 109049. .. CasRx-compatible gRNA expression cassettes used in this study were derived from pXR003: CasRx gRNA cloning backbone, Addgene plasmid no. 109053. ..

    Article Title: Adeno-Associated Viral Vector Resource for the RNA-Targeting Cas13d: A Comparison of High-Fidelity Variants, DjCas13d and hfCas13d
    Article Snippet: The DNA sequence of 399 RfxCas13d (CasRx) was derived from pXR001: EF1a-CasRx-2A-EGFP, Addgene plasmid #109049. .. CasRx-compatible 400 gRNA expression cassettes used in this study were derived from pXR003: CasRx gRNA cloning backbone, Addgene 401 plasmid #109053. ..



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